Effects of alkaline (kraft and soda) and organosolv pulping were evaluated relative to the structural properties of lignin isolated from coconut husk (CH) biomass. The various types of functional groups within the isolated lignin samples were characterized and compared using a variety of complementary analyses including Fourier-transform infrared (FTIR) spectroscopy, nuclear magnetic resonance (NMR) spectroscopy, gel permeation chromatography (GPC), and high-performance liquid chromatography (HPLC). All isolated CH lignin samples contained a significant quantity of non-condensed guaiacyl-type (G) and syringyl-type (S) units but a lesser amount of p-hydroxyphenyl (H) units, as demonstrated and supported by previous research. The alkaline CH lignin produced lignin with higher molecular weight (Mw SL: 959 g mol-1 > Mw KL: 769 g mol-1) than the organosolv lignin (Mw OL: 606 g mol-1) sample, resulting in smaller fragments and a higher degree of solubility in water or other solvents. Because of significant differences in the physicochemical characteristics of the various lignin polymers, their properties and structure were improved with respect to alternative approaches in lignin-based applications.